The table below lists the 14 rare (MAF<0.0001 in ExAC) non-truncating LDB3 variants identified in a cohort of 740 DCM patients. When this rare variant frequency of 0.01892 is compared with a background population rate of 0.01074, there is a case excess of 0.00818, although this is not statistically significant for non-truncating LDB3 variants in DCM (p=0.0458).
| No. | Variant (CDS)▼ | Variant (Protein) | Variant Type▼ | Cases (740)▼ | LMM class | ExAC frequency |
|---|---|---|---|---|---|---|
| 1. | c.1320_1343dup | p.Pro441_Ser448dup | inframe | 1 | VUS | 0.000000 |
| 2. | c.826C>T | p.R276C | missense | 1 | VUS | 0.000008 |
| 3. | c.343G>A | p.G115S | missense | 1 | VUS | 0.000000 |
| 4. | c.2155A>G | p.K719E | missense | 1 | VUS | 0.000000 |
| 5. | c.899C>A | p.T300N | missense | 1 | VUS favour pathogenic | 0.000000 |
| 6. | c.1475C>T | p.T492I | missense | 1 | VUS | 0.000000 |
| 7. | c.1472T>A | p.V491E | missense | 1 | VUS | 0.000033 |
| 8. | c.1320_1343del | p.Ala442_Pro449del | inframe | 1 | VUS | 0.000000 |
| 9. | c.530C>A | p.A177D | missense | 1 | VUS | 0.000000 |
| 10. | c.1907G>A | p.C636Y | missense | 1 | VUS | 0.000000 |
| 11. | c.1910C>T | p.A637V | missense | 1 | VUS | 0.000065 |
1. Roddy Walsh, Kate L. Thomson, James S. Ware, Birgit H. Funke, Jessica Woodley, Karen J. McGuire, Francesco Mazzarotto, Edward Blair, Anneke Seller, Jenny C. Taylor, Eric V. Minikel, Exome Aggregation Consortium, Daniel G. MacArthur, Martin Farrall, Stuart A. Cook and Hugh Watkins. Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. Genet Med. 2016 doi:10.1038/gim.2016.90.
2. Pugh TJ, Kelly MA, Gowrisankar S, Hynes E, Seidman MA, Baxter SM, Bowser M, Harrison B, Aaron D, Mahanta LM, Lakdawala NK, McDermott G, White ET, Rehm HL, Lebo M, Funke BH. The landscape of genetic variation in dilated cardiomyopathy as surveyed by clinical DNA sequencing. Genet Med. 2014 Aug;16(8):601-8.