The table below lists the 9 rare (MAF<0.0001 in ExAC) non-truncating VCL variants identified in a cohort of 590 DCM patients. When this rare variant frequency of 0.01525 is compared with a background population rate of 0.00984, there is a case excess of 0.00541, although this is not statistically significant for non-truncating VCL variants in DCM (p=0.2024).
| No. | Variant (CDS)▼ | Variant (Protein) | Variant Type▼ | Cases (590)▼ | LMM class | ExAC frequency |
|---|---|---|---|---|---|---|
| 1. | c.2444A>G | p.K815R | missense | 1 | VUS favour pathogenic (1) | 0.000016 |
| 2. | c.3092G>A | p.R1031Q | missense | 1 | VUS (1) | 0.000000 |
| 3. | c.952C>T | p.R318C | missense | 1 | VUS (1) | 0.000024 |
| 4. | c.3226C>T | p.R1076W | missense | 1 | VUS (1) | 0.000015 |
| 5. | c.2862_2864delGTT | inframe | 1 | VUS favour pathogenic (1) | 0.000000 | |
| 6. | c.2852C>G | p.P951R | missense | 1 | Likely Benign (1) | 0.000008 |
| 7. | c.1390A>C | p.K464Q | missense | 1 | VUS (1) | 0.000000 |
| 8. | c.1844C>T | p.A615V | missense | 1 | VUS (1) | 0.000024 |
| 9. | c.3373C>T | p.R1125C | missense | 1 | VUS (1) | 0.000024 |
1. Roddy Walsh, Kate L. Thomson, James S. Ware, Birgit H. Funke, Jessica Woodley, Karen J. McGuire, Francesco Mazzarotto, Edward Blair, Anneke Seller, Jenny C. Taylor, Eric V. Minikel, Exome Aggregation Consortium, Daniel G. MacArthur, Martin Farrall, Stuart A. Cook and Hugh Watkins. Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. Genet Med. 2016 doi:10.1038/gim.2016.90.
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