SCN5A splice variants in ExAC

SCN5A gene summary
SCN5A variants in

The table below lists the SCN5A splice variants found in the ExAC population database. Click on each variant for more details, including presence in the 1000 Genomes and Exome Sequencing Project databases, a breakdown by ethnic class and the variant's role in inherited cardiac disease. Use the form below to customise the variant selection. The table can be sorted by variant location, variant type or ExAC frequency.




No. Genomic coord.✝ Variant (CDS)▼ Variant (Protein) Variant Type▼ ExAC frequency▼Populations*
1. 38647642 c.1141-3C>A splice site 0.17223422●●●●●●
2. 38622868 c.2788-6C>T splice site 0.03963846●●●●●●
3. 38618142 c.3511+10C>T splice site 0.00643103●●●●●●
4. 38627537 c.2437-5C>A splice site 0.00034623●●●●●●
5. 38651221 c.934+4C>T splice site 0.00029208●●●●●●
6. 38618279 c.3391-7T>C splice site 0.00027924●●●●●●
7. 38598067 c.4302T>C p.Y1434Y splice site 0.00026680●●●●●●
8. 38649637 c.998+5G>A splice site 0.00018220●●●●●●
9. 38663985 c.393-5C>A splice site 0.00012968●●●●●●
10. 38607892 c.3840+8T>C splice site 0.00010779●●●●●●
11. 38618141 c.3511+11G>A splice site 0.00010339●●●●●●
12. 38597928 c.4437+4C>T splice site 0.00010193●●●●●●
13. 38598713 c.4299+9C>A splice site 0.00009974●●●●●●
14. 38649710 c.935-5T>C splice site 0.00009110●●●●●●
15. 38608080 c.3667-7T>A splice site 0.00006628●●●●●●
16. 38622416 c.3228+6C>G splice site 0.00006435●●●●●●
17. 38607892 c.3840+8_3840+9delTG splice site 0.00005809●●●●●●
18. 38663893 c.480C>T splice site 0.00005291●●●●●●
19. 38616784 c.3666+4C>G splice site 0.00005243●●●●●●
20. 38596047 c.4543-7C>T splice site 0.00004194●●●●●●
21. 38662325 c.611+9C>G splice site 0.00003621●●●●●●
22. 38651220 c.934+5G>A splice site 0.00003561●●●●●●
23. 38616778 c.3666+10T>C splice site 0.00003204●●●●●●
24. 38640549 c.1891-8G>A splice site 0.00002771●●●●●●
25. 38597928 c.4437+4C>G splice site 0.00002548●●●●●●
26. 38655228 c.703+6A>G splice site 0.00002509●●●●●●
27. 38607892 c.3840+8_3840+9dupTG splice site 0.00002490●●●●●●
28. 38598779 c.4246-4C>T splice site 0.00002487●●●●●●
29. 38649709 c.935-4A>G splice site 0.00002484●●●●●●
30. 38607900 c.3840C>T splice site 0.00002481●●●●●●
31. 38646397 c.1341C>T splice site 0.00002128●●●●●●
32. 38645196 c.1890+7C>T splice site 0.00001895●●●●●●
33. 38640549 c.1891-8G>C splice site 0.00001847●●●●●●
34. 38640546 c.1891-5C>T splice site 0.00001837●●●●●●
35. 38645580 c.1519-6C>T splice site 0.00001709●●●●●●
36. 38671925 c.274-5C>G splice site 0.00001657●●●●●●
37. 38663985 c.393-5C>T splice site 0.00001297●●●●●●
38. 38663980 c.393G>A splice site 0.00001251●●●●●●
39. 38601634 c.4245+4A>G splice site 0.00001219●●●●●●
40. 38618270 c.3393C>T p.T1131T splice site 0.00001114●●●●●●
41. 38622872 c.2788-10A>T splice site 0.00001104●●●●●●
42. 38648152 c.1140+8T>C splice site 0.00001091●●●●●●
43. 38622867 c.2788-5G>A splice site 0.00001059●●●●●●
44. 38628885 c.2436+6T>C splice site 0.00000969●●●●●●
45. 38628886 c.2436+5C>A splice site 0.00000965●●●●●●
46. 38622414 c.3228+8C>T splice site 0.00000922●●●●●●
47. 38595762 c.4813+8T>C splice site 0.00000870●●●●●●
48. 38595763 c.4813+7A>G splice site 0.00000869●●●●●●
49. 38639464 c.2024-6C>T splice site 0.00000860●●●●●●
50. 38639463 c.2024-5C>T splice site 0.00000859●●●●●●
51. 38593054 c.4814-5C>T splice site 0.00000855●●●●●●
52. 38596049 c.4543-9_4543-8delTC splice site 0.00000839●●●●●●
53. 38598714 c.4299+8G>A splice site 0.00000831●●●●●●
54. 38629062 c.2265C>A splice site 0.00000830●●●●●●
55. 38629062 c.2265C>G splice site 0.00000830●●●●●●
56. 38607893 c.3840+7G>T splice site 0.00000829●●●●●●
57. 38671925 c.274-5C>T splice site 0.00000829●●●●●●
58. 38649638 c.998+4T>C splice site 0.00000828●●●●●●
59. 38649708 c.935-3C>T splice site 0.00000828●●●●●●
60. 38608077 c.3667-4G>A splice site 0.00000828●●●●●●
61. 38597147 c.4542G>C splice site 0.00000827●●●●●●

* This highlights the relative frequency of the variant in the ExAC populations - Non-Finnish European, African, East Asian, South Asian, American and Finnish. Higher frequencies are denoted by darker shades of green, variants absent in a population are coloured light gray.

✝ Genomic coordinates refer to the GRCh37 release of the human genome.