Paralogue Annotation for KCNQ1 residue 351

Residue details

Gene: KCNQ1
Reference Sequences: LRG: LRG_287, Ensembl variant: ENST00000155840 / ENSP00000155840
Amino Acid Position: 351
Reference Amino Acid: F - Phenylalanine
Protein Domain: C-terminus


Paralogue Variants mapped to KCNQ1 residue 351

ParalogueVariantAssociated DiseaseMapping QualityConsensusPubmed
KCNB1F416LEpileptic encephalopathy, early onsetHigh9 26648591

To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in KCNQ1.



KCNQ1QTWVGKTIASCFSVFAISFFALPAGILGSG>F<ALKVQQKQRQKHFNRQIPA--AASLI-QTA378
KCNQ2QTWNGRLLAATFTLIGVSFFALPAGILGSG>F<ALKVQEQHRQKHFEKRRNP--AAGLI-QSA343
KCNQ3KTWEGRLIAATFSLIGVSFFALPAGILGSG>L<ALKVQEQHRQKHFEKRRKP--AAELI-QAA382
KCNQ4HTWLGRVLAAGFALLGISFFALPAGILGSG>F<ALKVQEQHRQKHFEKRRMP--AANLI-QAA349
KCNQ5LTWLGRLLSAGFALLGISFFALPAGILGSG>F<ALKVQEQHRQKHFEKRRNP--AANLI-QCV377
KCNA1VTIGGKIVGSLCAIAGVLTIALPVPVIVSN>F<NYFYHRETEGEEQAQLLH-----VS--SP-433
KCNA10TTPGGKIVGTLCAIAGVLTIALPVPVIVSN>F<NYFYHRETENEEKQNIPGEIERI-------483
KCNA2TTIGGKIVGSLCAIAGVLTIALPVPVIVSN>F<NYFYHRETEGEEQAQYLQ-----VT--SCP436
KCNA3VTIGGKIVGSLCAIAGVLTIALPVPVIVSN>F<NYFYHRETEGEEQSQYMH-----VG--SCQ506
KCNA4ITVGGKIVGSLCAIAGVLTIALPVPVIVSN>F<NYFYHRETENEEQTQLTQ-----NAV-SCP587
KCNA5ITVGGKIVGSLCAIAGVLTIALPVPVIVSN>F<NYFYHRETDHEEPAVLKEE--QGTQS-QGP546
KCNA6MTVGGKIVGSLCAIAGVLTIALPVPVIVSN>F<NYFYHRETEQEEQGQYTHV-----------480
KCNA7VTVGGKIVGSLCAIAGVLTISLPVPVIVSN>F<SYFYHRETEGEEAGMFSHV-----------416
KCNB1KTLLGKIVGGLCCIAGVLVIALPIPIIVNN>F<SEFYKEQKRQEKAIKRREA--LERA--KRN442
KCNB2KTLLGKIVGGLCCIAGVLVIALPIPIIVNN>F<SEFYKEQKRQEKAIKRREA--LERA--KRN446
KCNC1QTWSGMLVGALCALAGVLTIAMPVPVIVNN>F<GMYYSLAMAKQKLPKKKKK--HIPR--PPQ465
KCNC2QTWSGMLVGALCALAGVLTIAMPVPVIVNN>F<GMYYSLAMAKQKLPRKRKK--HIPP--APQ502
KCNC3KTWSGMLVGALCALAGVLTIAMPVPVIVNN>F<GMYYSLAMAKQKLPKKKNK--HIPR--PPQ568
KCNC4KTWSGMLVGALCALAGVLTIAMPVPVIVNN>F<GMYYSLAMAKQKLPKKRKK--HVPR--PAQ501
KCND1STIAGKIFGSICSLSGVLVIALPVPVIVSN>F<SRIYHQNQRADKRRAQQKV--RLARIRLAK439
KCND2KTIAGKIFGSICSLSGVLVIALPVPVIVSN>F<SRIYHQNQRADKRRAQKKA--RLARIRAAK437
KCND3KTIAGKIFGSICSLSGVLVIALPVPVIVSN>F<SRIYHQNQRADKRRAQKKA--RLARIRVAK434
KCNF1KTTLGKLNAAISFLCGVIAIALPIHPIINN>F<VRYYNKQRVLETAAKHELE--LMEL--N--433
KCNG1RSTPGQVVALSSILSGILLMAFPVTSIFHT>F<SRSYLELKQEQERVMFRRA--QFLI----K487
KCNG2RSLPGQVVALSSILSGILLMAFPVTSIFHT>F<SRSYSELKEQQQRAASPEP--ALQE----D432
KCNG3ITVPGRILGGVCVVSGIVLLALPITFIYHS>F<VQCYHELKFRSARYSR--------------428
KCNG4RSVPGQMVALSSILSGILIMAFPATSIFHT>F<SHSYLELKKEQEQLQARLR--HLQN----T481
KCNS1VTVAGKLAASGCILGGILVVALPITIIFNK>F<SHFYRRQKALEAAVRNSNH--QEFE--D--484
KCNS2GTTAGKLTASACILAGILVVVLPITLIFNK>F<SHFYRRQKQLESAMRSCDF--GDGM--K--437
KCNS3VTLAGKLIASTCIICGILVVALPITIIFNK>F<SKYYQKQKDIDVDQCSEDA--PEKC--H--433
KCNV1DTTTGKIVAFMCILSGILVLALPIAIINDR>F<SACYFTLKLKEAAVRQREA--LKKL--TKN457
KCNV2ETHLGRFFAFLCIAFGIILNGMPISILYNK>F<SDYYSKLKAYEYTTIRRER--GEVN--F--520
cons                              > <                              

See full Alignment of Paralogues


Known Variants in KCNQ1

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.F351Sc.1052T>C Inherited ArrhythmiaLQTSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaLQTS Genetic testing in the long QT syndrome: development and validation of an efficient approach to genotyping in clinical practice. JAMA. 2005 294(23):2975-80. 16414944
Inherited ArrhythmiaLQTS Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test. Heart Rhythm. 2009 6(9):1297-303. 19716085
p.F351Lc.1051T>C Inherited ArrhythmiaSIFT:
Polyphen:
ReportsInherited ArrhythmiaJLNS KCNQ1 mutations associated with Jervell and Lange-Nielsen syndrome and autosomal recessive Romano-Ward syndrome in India-expanding the spectrum of long QT syndrome type 1. Am J Med Genet A. 2016 170(6):1510-9. doi: 10.1002/ajmg.a.37636. 27041150