Paralogue Annotation for KCNQ1 residue 546

Residue details

Gene: KCNQ1
Reference Sequences: LRG: LRG_287, Ensembl variant: ENST00000155840 / ENSP00000155840
Amino Acid Position: 546
Reference Amino Acid: S - Serine
Protein Domain: C-terminus


Paralogue Variants mapped to KCNQ1 residue 546

No paralogue variants have been mapped to residue 546 for KCNQ1.



KCNQ1------YFVAKKKFQQARKPYDVRDVIEQY>S<QGHLNLMVRIKELQRRLDQSIGKPSLFIS-575
KCNQ2------FLVSKRKFKESLRPYDVMDVIEQY>S<AGHLDMLSRIKSLQSRVDQIVGRGPAITD-601
KCNQ3------FRLYKKKFKETLRPYDVKDVIEQY>S<AGHLDMLSRIKYLQTRIDMIFTPGPPSTP-580
KCNQ4------FLVAKRKFKETLRPYDVKDVIEQY>S<AGHLDMLGRIKSLQTRVDQIVGRGPGDRKA596
KCNQ5------FHVAKRKFKETLRPYDVKDVIEQY>S<AGHLDMLCRIKSLQTRVDQILGKGQITSD-583
KCNA1------TD---------------------->-<------------------------------494
KCNA10------SR---------------------->-<------------------------------510
KCNA2------TD---------------------->-<------------------------------498
KCNA3------TD---------------------->-<------------------------------574
KCNA4------TD---------------------->-<------------------------------652
KCNA5LDTSRETD---------------------->-<------------------------------612
KCNA6------TE---------------------->-<------------------------------528
KCNA7------TE---------------------->-<------------------------------455
KCNB1------EG-------DPSPLLPVLGMYHDP>L<RNRGSAAAAVAGLECA--------------711
KCNB2------ENRGSAPQTPPSTARPLPVTTADF>S<LTTPQHISTILLEETP--------------761
KCNC1------LSTGEYACPPGGGMRK-------->-<-DLCKESP---VIAKY--------------576
KCNC2------LTTGDYTCASDGGIRKG----YEK>S<RSLNNIAGLAGNALRL--------------614
KCNC3------LT--DYAPSPDGSIRKATGAPPLP>P<QDWRKPGPPS-FLPDL--------------747
KCNC4------LSTGDYACA-DGSVRKG----TFV>L<RDLPLQHSP---EAAC--------------624
KCND1------LDMLA--GLRRSHAPQSRSSLNAK>P<HDSLDLNCDSRDFVAA--------------597
KCND2------LSTIQIRCVERTPLSNSRSSLNAK>M<EECVKLNCEQPYVTTA--------------596
KCND3------LSTIHIQGSEQPSLTTSRSSLNLK>A<DDGLRPNCKTSQITTA--------------613
KCNF1------------------------------>-<------------------------------
KCNG1------------------------------>-<------------------------------
KCNG2------------------------------>-<------------------------------
KCNG3------------------------------>-<------------------------------
KCNG4------------------------------>-<------------------------------
KCNS1------------------------------>-<------------------------------
KCNS2------------------------------>-<------------------------------
KCNS3------------------------------>-<------------------------------
KCNV1------------------------------>-<------------------------------
KCNV2------------------------------>-<------------------------------
cons                              > <                              

See full Alignment of Paralogues


Known Variants in KCNQ1

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.S546Lc.1637C>T Inherited ArrhythmiaLQTSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaLQTS Four potassium channel mutations account for 73% of the genetic spectrum underlying long-QT syndrome (LQTS) and provide evidence for a strong founder effect in Finland. Ann Med. 2004 36 Suppl 1:53-63. 15176425
Inherited ArrhythmiaLQTS Spectrum and frequency of cardiac channel defects in swimming-triggered arrhythmia syndromes. Circulation. 2004 110(15):2119-24. 15466642
Inherited ArrhythmiaLQTS Compendium of cardiac channel mutations in 541 consecutive unrelated patients referred for long QT syndrome genetic testing. Heart Rhythm. 2005 2(5):507-17. 15840476
Inherited ArrhythmiaLQTS Long QT and Brugada syndrome gene mutations in New Zealand. Heart Rhythm. 2007 4(10):1306-14. 17905336
Inherited ArrhythmiaLQTS Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test. Heart Rhythm. 2009 6(9):1297-303. 19716085
Inherited ArrhythmiaLQTS Biophysical properties of 9 KCNQ1 mutations associated with long-QT syndrome. Circ Arrhythm Electrophysiol. 2009 2(4):417-26. 19808498
Inherited ArrhythmiaLQTS Genetic testing for long-QT syndrome: distinguishing pathogenic mutations from benign variants. Circulation. 2009 120(18):1752-60. 19841300
Inherited ArrhythmiaLQTS Phylogenetic and physicochemical analyses enhance the classification of rare nonsynonymous single nucleotide variants in type 1 and 2 long-QT syndrome. Circ Cardiovasc Genet. 2012 5(5):519-28. doi: 10.1161/CIRCGENETICS.112.963785. 22949429
Inherited ArrhythmiaLQTS Long QT mutations at the interface between KCNQ1 helix C and KCNE1 disrupt I(KS) regulation by PKA and PIPâ‚‚. J Cell Sci. 2014 127(Pt 18):3943-55. doi: 10.1242/jcs.147033. 25037568