Paralogue Annotation for SCN5A residue 1288

Residue details

Gene: SCN5A
Reference Sequences: LRG: LRG_289, Ensembl variant: ENST00000333535 / ENSP00000328968
Amino Acid Position: 1288
Reference Amino Acid: A - Alanine
Protein Domain: TM Domain 3


Paralogue Variants mapped to SCN5A residue 1288

No paralogue variants have been mapped to residue 1288 for SCN5A.



SCN5AGF----KKYFTNAWCWLDFLIVDVSLVSLV>A<N-T----LGFAEMGPIKSLRTLRALRPLRA1313
SCN1AGY----QTYFTNAWCWLDFLIVDVSLVSLT>A<N-A----LGYSELGAIKSLRTLRALRPLRA1326
SCN2AGF----QVYFTNAWCWLDFLIVDVSLVSLT>A<N-A----LGYSELGAIKSLRTLRALRPLRA1316
SCN3AGF----QTYFTNAWCWLDFLIVDVSLVSLV>A<N-A----LGYSELGAIKSLRTLRALRPLRA1314
SCN4AGF----KVYFTNAWCWLDFLIVDVSIISLV>A<N-W----LGYSELGPIKSLRTLRALRPLRA1139
SCN7AGF----KAYFSNGWYRLDFVVVIVFCLSLI>G<K-T----RE--E---LKPLISMKFLRPLRV1037
SCN8AGF----VKFFTNAWCWLDFLIVAVSLVSLI>A<N-A----LGYSELGAIKSLRTLRALRPLRA1306
SCN9AGY----KTYFTNAWCWLDFLIVDVSLVTLV>A<N-T----LGYSDLGPIKSLRTLRALRPLRA1289
SCN10AGF----KKYFTNAWCWLDFLIVNISLISLT>A<K-I----LEYSEVAPIKALRTLRALRPLRA1260
SCN11AGF----GKYFTSAWCCLDFIIVIVSVTTLI>-<--------N---LMELKSFRTLRALRPLRA1157
CACNA1AGLVLHQGAYFRDLWNILDFIVVSGALVAFA>F<TGN----SKGKDINTIKSLRVLRVLRPLKT1356
CACNA1BGLLLHPGAYFRDLWNILDFIVVSGALVAFA>F<S-G----SKGKDINTIKSLRVLRVLRPLKT1262
CACNA1CGAFLHKGSFCRNYFNILDLLVVSVSLISF->-<--G----IQSSAINVVKILRVLRVLRPLRA1008
CACNA1DGAFLHKGAFCRNYFNLLDMLVVGVSLVSF->-<--G----IQSSAISVVKILRVLRVLRPLRA1014
CACNA1EGLILQDGSYFRDLWNILDFVVVVGALVAFA>L<ANA-LGTNKGRDIKTIKSLRVLRVLRPLKT1268
CACNA1FGAFLHRGSFCRSWFNMLDLLVVSVSLISF->-<--G----IHSSAISVVKILRVLRVLRPLRA979
CACNA1GGWCFGEQAYLRSSWNVLDGLLVLISVIDIL>V<S-MVSD-SGTKILGMLRVLRLLRTLRPLRV1391
CACNA1HGLLSGEHAYLQSSWNLLDGLLVLVSLVDIV>V<A-MASA-GGAKILGVLRVLRLLRTLRPLRV1409
CACNA1IGLYFGEQAYLRSSWNVLDGFLVFVSIIDIV>V<S-LASA-GGAKILGVLRVLRLLRTLRPLRV1285
CACNA1SGAFLHKGSFCRNYFNMLDLLVVAVSLISM->-<--G----LESSAISVVKILRVLRVLRPLRA907
cons                              > <                              

See full Alignment of Paralogues


Known Variants in SCN5A

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.A1288Gc.3863C>G Inherited ArrhythmiaBrSSIFT: deleterious
Polyphen: probably damaging
ReportsInherited ArrhythmiaBrS An international compendium of mutations in the SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing. Heart Rhythm. 2010 7(1):33-46. 20129283