Paralogue Annotation for SCN5A residue 619

Residue details

Gene: SCN5A
Reference Sequences: LRG: LRG_289, Ensembl variant: ENST00000333535 / ENSP00000328968
Amino Acid Position: 619
Reference Amino Acid: L - Leucine
Protein Domain: Interdomain Linker I-II


Paralogue Variants mapped to SCN5A residue 619

No paralogue variants have been mapped to residue 619 for SCN5A.



SCN5A-DCNGVVSLLG-AGD----PEAT-SPGSHL>L<RP-------------VMLEHPP--DTTTPS634
SCN1AVDCNGVVSLVG-G-P----SVPT-SPVGQL>L<PE-------------VIIDKPATDDNGTTT685
SCN2AVDCNGVVSLVG-G-P----STLT-SA-GQL>L<PE------------------------GTTT676
SCN3AVDCNGVVSLVG-G-P----SALT-SPTGQL>P<PE------------------------GTTT677
SCN4A-DCNGSLDTSQ-G----------------->-<------------------------------515
SCN7A------------------------------>-<----------------------------TI434
SCN8AVDCNGVVSLIG-G-P----GSHI---GGRL>L<PE------------------------A-TT669
SCN9AVDCNGVVSLVD-G-R----SALM-LPNGQL>L<PE-------------G-----------TTN651
SCN10A--------SRH-G-E----DEHQPPPT-SE>L<AP----------------------GAVDVS585
SCN11A-DCQKKPQLLE-Q----------------->-<T-----------------------------498
CACNA1A------------------------------>-<---------------------------D--432
CACNA1B------------------------------>-<---------------------------D--428
CACNA1C------------------------------>-<---------------------------E--472
CACNA1D------------------------------>-<---------------------------E--472
CACNA1E------------------------------>-<---------------------------E--421
CACNA1F------------------------------>-<---------------------------T--458
CACNA1GAASSGPPTLTSL-NI----PPGPY-SSMHK>L<LETQSTGACQS-----SC--KISSPCLK--656
CACNA1HGKWAGGPPGTGGHGPLSLNSPDPY-EKIPH>V<VGEHGLGQAPGHLSGLSV--PCPLPSPP--689
CACNA1I-TLAS------------------------->-<------------------------------548
CACNA1S------------------------------>-<---------------------------E--396
cons                              > <                              

See full Alignment of Paralogues


Known Variants in SCN5A

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.L619Fc.1855C>T Inherited ArrhythmiaLQTS,BrSSIFT: tolerated
Polyphen: benign
ReportsInherited ArrhythmiaLQTS A novel mutation L619F in the cardiac Na+ channel SCN5A associated with long-QT syndrome (LQT3): a role for the I-II linker in inactivation gating. Hum Mutat. 2003 21(5):552. 12673799
Other Cardiac Phenotype Long QT syndrome in neonates: conduction disorders associated with HERG mutations and sinus bradycardia with KCNQ1 mutations. J Am Coll Cardiol. 2004 43(5):826-30. 14998624
Inherited ArrhythmiaBrS An international compendium of mutations in the SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing. Heart Rhythm. 2010 7(1):33-46. 20129283
Inherited ArrhythmiaLQTS High prevalence of genetic variants previously associated with LQT syndrome in new exome data. Eur J Hum Genet. 2012 20(8):905-8. doi: 10.1038/ejhg.2012.23. 22378279
Inherited ArrhythmiaLQTS High prevalence of genetic variants previously associated with Brugada syndrome in new exome data. Clin Genet. 2013 23414114
Unknown Actionable exomic incidental findings in 6503 participants: challenges of variant classification. Genome Res. 2015 25(3):305-15. doi: 10.1101/gr.183483.114. 25637381