Paralogue Annotation for SCN5A residue 647

Residue details

Gene: SCN5A
Reference Sequences: LRG: LRG_289, Ensembl variant: ENST00000333535 / ENSP00000328968
Amino Acid Position: 647
Reference Amino Acid: A - Alanine
Protein Domain: Interdomain Linker I-II


Paralogue Variants mapped to SCN5A residue 647

No paralogue variants have been mapped to residue 647 for SCN5A.



SCN5A---VMLEHPP--DTTTPSEEPGGPQMLTSQ>A<PCVD-GFEEPGARQR-A-LSAVSVLTSA--672
SCN1A---VIIDKPATDDNGTTTETEMRKRRSSSF>H<VSMD-FLEDPSQRQR-A-MSIASILTNT--723
SCN2A--------------GTTTETEIRKRRSSSY>H<VSMD-LLEDPTSRQR-A-MSIASILTNT--714
SCN3A--------------GTTTETEVRKRRLSSY>Q<ISME-MLEDSSGRQR-A-VSIASILTNT--715
SCN4A------------------------------>-<-----E---KGAPRQ-S-SSGDSGISDA--533
SCN7A----------------TIQIEMKKRSPIST>D<TSLD-VLEDATLRHK---------------461
SCN8A--------------A-TTEVEIKKKGPGSL>L<VSMD-QLASYGRKDR-I-NSIMSVVTNTL-708
SCN9A---G-----------TTNQIH-KKRRCSSY>L<LSED-MLNDPNLRQR-A-MSRASILTNT--688
SCN10A------------GAVDVSAFD---AGQKKT>F<LSAE-YLDEPFRAQR-A-MSVVSIITSV--620
SCN11A----------------------KRLSQNLS>L<DHFD-EHGDPLQRQR-A-LSAVSILTIT--532
CACNA1A---------------D----------LLNP>E<EAED-QLA----DIA-S-VG----------450
CACNA1B---------------D----------LIHA>E<EGED-RFA----DLC-A-VG----------446
CACNA1C---------------E----------SVNT>E<NVAG-G-D----IEGEN-CG----------490
CACNA1D---------------E----------SVNT>E<NVSG-EGE----NRG-C-CGSLWCWWR---497
CACNA1E---------------E----------AMTR>D<SSDE-HCV----DIS-S-VG----------439
CACNA1F---------------T----------RS-T>H<STSSHASL----P-A-SDTGSMTETQG---483
CACNA1G----SC--KISSPCLK----------ADSG>A<CGPD-SCP----YCA-R-AG-----AG---676
CACNA1HLSGLSV--PCPLPSPP----------AGTL>T<CELK-SCP----YCT-R-AL-----ED-P-710
CACNA1I------------------------------>-<-DPA-SCP----CCQ-H-ED-----GR-RP564
CACNA1S---------------E----------SLY->E<I-----------------------------401
cons                              > <                              

See full Alignment of Paralogues


Known Variants in SCN5A

ProteinCDSDisease ClassificationDiseasedbSNP linksEffect Prediction
p.A647Dc.1940C>A Inherited ArrhythmiaBrSSIFT: tolerated
Polyphen: benign
ReportsInherited ArrhythmiaBrS An international compendium of mutations in the SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing. Heart Rhythm. 2010 7(1):33-46. 20129283
Inherited ArrhythmiaBrS Brugada syndrome disease phenotype explained in apparently benign sodium channel mutations. Circ Cardiovasc Genet. 2014 7(2):123-31. doi: 10.1161/CIRCGENETICS.113.000292. 24573164
Inherited ArrhythmiaBrS Identification of Medically Actionable Secondary Findings in the 1000 Genomes. PLoS One. 2015 10(9):e0135193. doi: 10.1371/journal.pone.0135193. 26332594
p.A647Vc.1940C>T Putative BenignSIFT: tolerated
Polyphen: benign
p.A647Sc.1939G>T Putative BenignSIFT:
Polyphen: