Titin Variants in Dilated Cardiomyopathy

TTN Transcript / Exon Structure & Truncating Variants in Cardiomyopathy Studies

Titin - Exon 356

Details for Exon 356 of the Titin gene - Sequence Coordinates, Associated Transcripts, Functional Data, Truncating Variants and Sequence.

The exon number is based on the LRG numbering, as recommended for clinical reporting.

Coordinates

The genomic coordinates of HG19 and Locus Reference Genomic (LRG) and the CDS coordinates of the Titin meta-transcript for exon 356 are displayed below.

HG19 Genomic Locus Reference Genomic Meta-Transcript
StartEnd StartEnd StartEnd
179,402,644 179,402,069 297,886 298,46199,290 99,865

Transcripts

Exon 356 occurs in the following Titin transcripts (the number indicates the exon rank of exon 356 in each transcript).

METAN2BAN2BN2ANOVEX-1NOVEX-2NOVEX-3
355 305 183 304 184 184 -

Functional Data

Region: This exon occurs in the A-band region of the titin protein.

Domains: This exon codes for the following domain(s) - Ig-like 140.

PSI: The "proportion spliced-in" (an estimate of the percentage of TTN transcripts that incorporate this exon based on RNAseq data) is 100% in DCM (LV tissue of 84 end-stage patients) and 100% in GTEx (LV tissue of 105 samples from Genotype-Tissue Expression project). (See Ref. 1 for details)

Symmetry: This exon is symmetric, i.e. the length of the exon is a multiple of three and therefore removal of it will not alter the reading frame.

References
1. A. M. Roberts, J. S. Ware, D. S. Herman et al. Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease. Sci. Transl. Med. 7, 270ra6 (2015).

Truncating Variants

The following TTN truncating variants affecting this exon have been described in major published studies (click on the study name for more details):

StudyCohortPatient IDVariant (CDS)Variant (protein)Variant Type
NEJM 2012Controlspv-35c.99865+2T>Cessential splice site

Sequence

Size of Exon: 576 bases           Ensembl ID: ENSE00001736827

CTGGAGAGGCCCCAGGAATACGCAAAGAAATGAAGGATGTTACCACAAAATTGGGTGAAGCTGCTCAACTCTCATGCCAGATTGTTGGAAGGCCTCTTCCTGACATTAAATGGTACAGAT
TTGGTAAAGAGCTCATACAAAGCCGGAAATACAAAATGTCTTCAGATGGACGCACACACACTCTTACAGTAATGACAGAGGAACAGGAAGATGAAGGTGTTTATACCTGCATAGCCACCA
ATGAGGTTGGAGAAGTAGAAACCAGTAGTAAGCTTCTCCTGCAAGCAACACCGCAGTTCCATCCTGGTTACCCACTGAAAGAGAAATATTATGGAGCTGTGGGTTCCACACTTCGGCTTC
ATGTTATGTACATTGGTCGTCCAGTACCTGCCATGACTTGGTTCCATGGTCAGAAACTTTTGCAAAACTCAGAAAACATTACTATTGAAAACACTGAGCACTATACTCATCTTGTCATGA
AGAATGTCCAACGTAAGACTCATGCTGGGAAATACAAAGTCCAGCTCAGCAATGTTTTTGGAACAGTTGATGCCATCCTTGATGTGGAAATACAAG

ATGC = coding sequence, ATGC = non-coding sequence