| Paralogue | Variant | Associated Disease | Mapping Quality | Consensus | Pubmed |
|---|---|---|---|---|---|
| SCN1A | R1861W | Intractable epilepsy | High | 9 | 23195492 |
To assess whether the paralogue annotation here confidently predicts that variation at this residue is pathogenic, it is important to check the reports in the Pubmed links above to ascertain that the mutations in these paralogues have been proved likely to be disease-causing. It is also important to check that the direction of effect of the variant in the paralogue is compatible with your observed phenotype in SCN5A.
| SCN5A | LR--IAK--PNQI---SLINMDLPMVSGD->R<IHCMDILFAFTKRVLGES--G---EMDALK | 1872 |
| SCN1A | LN--LPQ--PNKL---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDALR | 1886 |
| SCN2A | LL--IAK--PNKV---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDALR | 1876 |
| SCN3A | LL--IAK--PNKV---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDALR | 1871 |
| SCN4A | LR--IAK--PNKI---KLITLDLPMVPGD->K<IHCLDILFALTKEVLGDS--G---EMDALK | 1698 |
| SCN7A | LF--MAK--PNKG---QLIALDLPMAVGD->R<IHCLDILLAFTKRVMGQD--V---RMEKVV | 1596 |
| SCN8A | LR--VPK--PNTI---ELIAMDLPMVSGD->R<IHCLDILFAFTKRVLGDS--G---ELDILR | 1866 |
| SCN9A | LL--IAK--PNKV---QLIAMDLPMVSGD->R<IHCLDILFAFTKRVLGES--G---EMDSLR | 1849 |
| SCN10A | LR--IPK--PNRN---ILIQMDLPLVPGD->K<IHCLDILFAFTKNVLGES--G---ELDSLK | 1822 |
| SCN11A | LR--VAK--PNKY---QFLVMDLPMVSED->R<LHCMDILFAFTARVLGGS--D---GLDSMK | 1704 |
| CACNA1A | LG--LGKKCPHRVACKRLLRMDLPVADD-N>T<VHFNSTLMALIRTALDIKIAKGGADKQQMD | 1920 |
| CACNA1B | LG--LGKKCPARVAYKRLVRMNMPISNEDM>T<VHFTSTLMALIRTALEIKLAPAGTKQHQCD | 1819 |
| CACNA1C | LG--FGKLCPHRVACKRLVSMNMPLNSDG->T<VMFNATLFALVRTALRIKTEG---NLEQAN | 1582 |
| CACNA1D | LG--FGKLCPHRVACKRLVAMNMPLNSDG->T<VMFNATLFALVRTALKIKTEG---NLEQAN | 1590 |
| CACNA1E | LG--LGKRCPSKVAYKRLVLMNMPVAED-M>T<VHFTSTLMALIRTALDIKIAKGGADRQQLD | 1832 |
| CACNA1F | LG--FGKLCPHRVACKRLVAMNMPLNSDG->T<VTFNATLFALVRTSLKIKTEG---NLEQAN | 1547 |
| CACNA1G | DS--PDSPKPGAL---------HPAAHA-R>S<ASHFSLEHPTDRQLFDTI---S--LLIQGS | 1942 |
| CACNA1H | LP--QESPG--AR--------DAPN----->-<---------LVARKV--------------- | 1919 |
| CACNA1I | GGAGGGGDT--EG---GLCRRCYSPAQE-N>-<-LWLDSVSLIIKDSL--------------- | 1814 |
| CACNA1S | LG--FGKFCPHRVACKRLVGMNMPLNSDG->T<VTFNATLFALVRTALKIKTEG---NFEQAN | 1487 |
| cons | > < |
| Protein | CDS | Disease Classification | Disease | dbSNP links | Effect Prediction |
|---|---|---|---|---|---|
| p.R1847H | c.5540G>A | Inherited Arrhythmia | BrS | rs369058100 | SIFT: Polyphen: |
| Reports | Inherited Arrhythmia | BrS | Genetics can contribute to the prognosis of Brugada syndrome: a pilot model for risk stratification. Eur J Hum Genet. 2013 21(9):911-7. doi: 10.1038/ejhg.2012.289. 23321620 | ||
| p.R1847C | c.5539C>T | Putative Benign | SIFT: Polyphen: | ||